]> bioc xps->methods edd->methods edd->golubEsets edd->Biobase edd->class edd->nnet edd->xtable Biobase->methods Biobase->utils Biobase->tools Biostrings->methods Biostrings->stats LMGene->Biobase LMGene->multtest LMGene->survival multtest->methods multtest->Biobase multtest->survival genefilter->methods genefilter->Biobase genefilter->survival Icens->survival iterativeBMAsurv->survival iterativeBMAsurv->BMA iterativeBMAsurv->leaps iterativeBMAsurv->splines Rtreemix->methods Rtreemix->Biobase Rtreemix->graph graph->methods maCorrPlot->lattice pickgene->MASS Harshlight->affy Harshlight->altcdfenvs affy->methods affy->Biobase affy->utils affy->preprocessCore affy->affyio altcdfenvs->methods altcdfenvs->Biobase altcdfenvs->Biostrings altcdfenvs->affy altcdfenvs->hypergraph altcdfenvs->makecdfenv altcdfenvs->matchprobes nem->graph nem->e1071 nem->Rgraphviz nem->RBGL nem->time nem->cluster nem->bootstrap nem->RColorBrewer nem->plotrix Rgraphviz->methods Rgraphviz->graph Rgraphviz->grid Rgraphviz->utils RBGL->methods RBGL->graph apComplex->graph apComplex->Rgraphviz apComplex->RBGL apComplex->org.Sc.sgd.db annotate->methods annotate->Biobase annotate->xtable annotate->AnnotationDbi AnnotationDbi->methods AnnotationDbi->Biobase AnnotationDbi->utils AnnotationDbi->DBI AnnotationDbi->RSQLite hexbin->methods hexbin->stats hexbin->lattice hexbin->grid EBImage->methods EBImage->stats EBImage->graphics EBImage->utils hypergraph->methods hypergraph->graph made4->ade4 preprocessCore->methods exonmap->methods exonmap->genefilter exonmap->affy exonmap->RColorBrewer exonmap->simpleaffy exonmap->RMySQL exonmap->DBI exonmap->plier simpleaffy->methods simpleaffy->Biobase simpleaffy->genefilter simpleaffy->affy simpleaffy->utils simpleaffy->gcrma plier->methods plier->affy bgafun->made4 bgafun->ade4 bgafun->seqinr pdmclass->Biobase pdmclass->fibroEset pdmclass->mda Ringo->methods Ringo->Biobase Ringo->genefilter Ringo->RColorBrewer Ringo->graphics Ringo->geneplotter Ringo->limma Ringo->vsn Ringo->SparseM geneplotter->methods geneplotter->Biobase geneplotter->lattice geneplotter->annotate limma->methods vsn->methods vsn->Biobase vsn->lattice vsn->affy vsn->limma factDesign->Biobase factDesign->stats factDesign->affy keggorth->graph keggorth->RBGL keggorth->hgu95av2.db keggorth->ALL flowClust->methods flowClust->mnormt flowClust->mclust flowClust->ellipse flowClust->flowCore flowCore->methods flowCore->Biobase flowCore->rrcov flowCore->feature SIM->fields SIM->globaltest SIM->marray SIM->quantsmooth SIM->clac globaltest->methods globaltest->multtest globaltest->annotate globaltest->AnnotationDbi globaltest->graphics marray->methods marray->limma quantsmooth->grid quantsmooth->quantreg quantsmooth->lodplot MVCClass->methods pamr->survival pamr->cluster SemSim->annotate SemSim->GO SLqPCR->stats SLqPCR->RColorBrewer affyQCReport->Biobase affyQCReport->xtable affyQCReport->genefilter affyQCReport->lattice affyQCReport->affy affyQCReport->RColorBrewer affyQCReport->simpleaffy affyQCReport->geneplotter affyQCReport->affyPLM affyPLM->methods affyPLM->Biobase affyPLM->stats affyPLM->affy affyPLM->preprocessCore affyPLM->gcrma Ruuid->methods BiocCaseStudies->methods BiocCaseStudies->Biobase BiocCaseStudies->utils BiocCaseStudies->tools ncdfExts->methods ncdfExts->ncdf BufferedMatrixMethods->methods BufferedMatrixMethods->BufferedMatrix BufferedMatrix->methods Rintact->methods Rintact->Biobase Rintact->graph Rintact->RBGL Rintact->hypergraph Rintact->XML metaArray->MergeMaid MergeMaid->methods MergeMaid->Biobase MergeMaid->survival MergeMaid->MASS RefPlus->Biobase RefPlus->affy RefPlus->affyPLM BGmix->KernSmooth CoCiteStats->org.Hs.eg.db puma->Biobase puma->affy puma->annotate puma->limma puma->ROCR weaver->utils weaver->tools weaver->digest weaver->codetools pkgDepTools->methods pkgDepTools->graph pkgDepTools->RBGL annotationTools->Biobase Rrsat->methods affycoretools->Biobase affycoretools->xtable affycoretools->affy affycoretools->annotate affycoretools->AnnotationDbi affycoretools->limma affycoretools->GOstats affycoretools->biomaRt affycoretools->gcrma affycoretools->annaffy GOstats->graph GOstats->RBGL GOstats->annotate GOstats->GO.db biomaRt->methods biomaRt->RCurl gcrma->Biobase gcrma->splines gcrma->affy gcrma->matchprobes annaffy->methods annaffy->Biobase annaffy->GO.db annaffy->KEGG.db fbat->MASS fbat->GeneticsBase GeneticsBase->methods GeneticsBase->xtable GeneticsBase->combinat GeneticsBase->mvtnorm GeneticsBase->haplo.stats MiPP->Biobase MiPP->MASS MiPP->e1071 buildBioC->tools buildBioC->DynDoc DynDoc->methods DynDoc->utils VanillaICE->methods VanillaICE->Biobase VanillaICE->SNPchip VanillaICE->oligoClasses SNPchip->methods SNPchip->Biobase SNPchip->oligoClasses oligoClasses->Biobase beadarraySNP->methods beadarraySNP->Biobase beadarraySNP->quantsmooth beadarraySNP->tools sizepower->stats ontoTools->methods ontoTools->Biobase ontoTools->graph ontoTools->annotate ontoTools->SparseM ontoTools->GO.db EBarrays->Biobase EBarrays->lattice EBarrays->cluster EBarrays->utils xcms->methods rfcprim->rflowcyt rfcprim->rfcdmin rflowcyt->methods rflowcyt->xtable rflowcyt->stats rflowcyt->survival rflowcyt->MASS rflowcyt->grid rflowcyt->KernSmooth GSEABase->methods GSEABase->Biobase GSEABase->graph GSEABase->annotate GSEABase->AnnotationDbi MANOR->GLAD TypeInfo->methods bridge->rama BioMVCClass->methods BioMVCClass->Biobase BioMVCClass->graph BioMVCClass->Rgraphviz BioMVCClass->MVCClass Rrefdb->methods Rrefdb->utils Rrefdb->tools plw->splines plw->MASS plw->affy CMA->methods CMA->Biobase CMA->stats lapmix->Biobase BeadExplorer->methods BeadExplorer->affy BeadExplorer->widgetTools BeadExplorer->R2HTML BeadExplorer->grDevices BeadExplorer->tkWidgets widgetTools->methods widgetTools->utils widgetTools->tcltk tkWidgets->methods tkWidgets->widgetTools tkWidgets->DynDoc(>= OutlierD->Biobase OutlierD->quantreg GeneRfold->GeneR PCpheno->org.Sc.sgd.db PCpheno->GO.db PCpheno->ScISI PCpheno->SLGI PCpheno->ppiStats PCpheno->ppiData PCpheno->KEGG.db ScISI->methods ScISI->graph ScISI->Rgraphviz ScISI->RBGL ScISI->apComplex ScISI->GOstats ScISI->GO.db SLGI->methods SLGI->lattice SLGI->org.Sc.sgd.db SLGI->GO.db SLGI->ScISI ppiStats->methods ppiStats->Biobase ppiStats->graph ppiStats->lattice ppiStats->RColorBrewer ppiStats->org.Sc.sgd.db ppiStats->AnnotationDbi ppiStats->grid ppiStats->GOstats ppiStats->GO.db ppiStats->ScISI ppiStats->ppiData ppiStats->Category twilight->Biobase twilight->stats twilight->splines plateCore->flowCore plateCore->flowViz flowViz->lattice flowViz->RColorBrewer flowViz->flowCore flowViz->latticeExtra aCGH->multtest aCGH->survival aCGH->cluster aCGH->sma flygrid->Rgraphviz flygrid->RColorBrewer RpsiXML->methods RpsiXML->Biobase RpsiXML->graph RpsiXML->RBGL RpsiXML->annotate RpsiXML->hypergraph RpsiXML->XML pcaMethods->methods pcaMethods->MASS pcaMethods->pls GGBase->methods GGBase->Biobase GGBase->GSEABase GSEAlm->Biobase GeneMeta->methods GeneMeta->Biobase GeneMeta->genefilter CORREP->e1071 epistasis->methods epistasis->graph biocViews->methods biocViews->graph biocViews->RBGL biocViews->tools biocViews->XML copa->methods copa->Biobase LPEadj->LPE adSplit->methods adSplit->stats adSplit->multtest adSplit->cluster adSplit->graphics Category->methods Category->Biobase Category->graph GeneSelector->methods GeneSelector->Biobase GeneSelector->stats MassSpecWavelet->waveslim Rswub->SJava affyExonMuncher->geneplotter affyExonMuncher->AnnBuilder affyExonMuncher->tcltk affyExonMuncher->tkrplot AnnBuilder->methods AnnBuilder->Biobase AnnBuilder->annotate AnnBuilder->utils AnnBuilder->XML rtracklayer->methods rtracklayer->Biobase rtracklayer->Biostrings rtracklayer->RCurl cosmoGUI->tkWidgets cosmoGUI->cosmo cosmo->methods cosmo->utils cosmo->seqLogo makecdfenv->methods makecdfenv->Biobase makecdfenv->affy makecdfenv->utils makecdfenv->affyio affyio->methods RBioinf->methods RBioinf->graph smoothMiner->methods smoothMiner->Biobase smoothMiner->Biostrings smoothMiner->utils smoothMiner->tools smoothMiner->mgcv smoothMiner->locfit RbcBook1->Biobase RbcBook1->graph nudge->stats clusterStab->methods clusterStab->Biobase affyPara->affy affyPara->snow Ratlpow->methods Ratlpow->limma timecourse->methods timecourse->Biobase timecourse->MASS timecourse->limma dualKS->methods dualKS->Biobase dualKS->affy flowUtils->Biobase flowUtils->flowCore flowUtils->XML ITALICS->GLAD ITALICS->ITALICSData ITALICS->oligo ITALICS->affxparser ITALICS->pd.mapping50k.xba240 ITALICS->pd.mapping50k.hind240 ITALICS->pd.mapping250k.sty ITALICS->pd.mapping250k.nsp oligo->methods oligo->Biobase rsbml->methods rsbml->graph rsbml->utils GeneticsDesign->combinat GeneticsDesign->gdata GeneticsDesign->gmodels GeneticsDesign->gtools GeneticsDesign->mvtnorm sscore->affy GGtools->methods GGtools->Biobase GGtools->GGBase GGtools->hgfocus.db GGtools-> oneChannelGUI->Biobase oneChannelGUI->tkWidgets oneChannelGUI->affylmGUI affylmGUI->Biobase affylmGUI->affy affylmGUI->limma affylmGUI->tcltk affylmGUI->affyio ROC->methods ROC->utils maSigPro->Biobase beadarray->methods beadarray->Biobase beadarray->affy beadarray->geneplotter beadarray->limma matchprobes->Biobase matchprobes->affy cghMCR->methods cghMCR->marray cghMCR->DNAcopy cghMCR->arrayQuality arrayQuality->RColorBrewer arrayQuality->hexbin arrayQuality->limma arrayQuality->marray arrayQuality->convert arrayQuality->gridBase SBMLR->XML SBMLR->odesolve GeneTraffic->Biobase GeneTraffic->affy GeneTraffic->marray PROcess->Icens SMAP->methods seqLogo->methods seqLogo->grid convert->methods convert->Biobase convert->utils convert->limma convert->marray ShortRead->methods ShortRead->Biobase ShortRead->Biostrings ShortRead->lattice ABarray->Biobase ABarray->multtest ABarray->tcltk SAGx->methods SAGx->stats SAGx->multtest DEDS->methods tilingArray->methods tilingArray->Biobase tilingArray->affy tilingArray->RColorBrewer snpMatrix->methods snpMatrix->survival AffyCompatible->methods AffyCompatible->XML AffyCompatible->RCurl logicFS->LogicReg bgx->Biobase bgx->affy bgx->gcrma OCplus->multtest OCplus->akima plgem->Biobase plgem->MASS OrderedList->Biobase OrderedList->twilight bioDist->methods bioDist->Biobase widgetInvoke->methods widgetInvoke->XML widgetInvoke->RGtk hopach->methods hopach->Biobase hopach->cluster reb->Biobase reb->idiogram idiogram->methods idiogram->Biobase idiogram->plotrix idiogram->annotate rbsurv->Biobase rbsurv->survival AffyExpress->affy AffyExpress->limma simulatorAPMS->graph simulatorAPMS->Rgraphviz simulatorAPMS->apComplex simulatorAPMS->ScISI simulatorAPMS->ppiStats ecolitk->Biobase ecolitk->affy ecolitk->ecoliLeucine ecolitk->ecolicdf stam->Biobase stam->GO.db stam->pamr(>= GraphAT->graph GraphAT->MCMCpack RDocBook->methods RDocBook->utils RDocBook->tools MLInterfaces->methods MLInterfaces->Biobase MLInterfaces->genefilter MLInterfaces->MASS MLInterfaces->annotate MLInterfaces->rpart MLInterfaces->rda prism->EBImage ArrayExpress->Biobase ArrayExpress->Biostrings ArrayExpress->affy ArrayExpress->limma RdbiPgSQL->Rdbi RSNPper->methods RSNPper->utils RSNPper->tools RSNPper->XML biocGraph->methods biocGraph->Biobase biocGraph->graph biocGraph->Rgraphviz biocGraph->fibroEset biocGraph->geneplotter biocGraph->hgu95av2.db OLINgui->OLIN OLIN->methods OLIN->Biobase OLIN->stats OLIN->marray OLIN->locfit pcot2->Biobase pcot2->grDevices pcot2->amap iterativeBMA->Biobase iterativeBMA->BMA iterativeBMA->leaps prada->methods prada->Biobase prada->RColorBrewer prada->grid prada->rrcov gaggle->graph gaggle->rJava gaggle->RUnit safe->Biobase safe->annotate safe->SparseM safe->GO biocSurvey->methods biocSurvey->graph biocSurvey->RBGL biocSurvey->utils biocSurvey->tools daMA->MASS spikeLI->utils miRNApath->methods qvalue->tcltk CALIB->methods CALIB->limma pathRender->graph pathRender->Rgraphviz pathRender->RColorBrewer pathRender->AnnotationDbi pathRender->cMAP BCRANK->methods HEM->Biobase HELP->Biobase HELP->stats HELP->graphics HELP->grDevices ssize->xtable ssize->gdata graphPart->methods graphPart->graph graphPart->hypergraph graphPart->arules makePlatformDesign->affyio makePlatformDesign->oligo ctc->amap snapCGH->methods snapCGH->cluster snapCGH->limma snapCGH->GLAD snapCGH->aCGH snapCGH->DNAcopy snapCGH->tilingArray goTools->Biobase goTools->annotate goTools->GO sagenhaft->SparseM yaqcaffy->methods yaqcaffy->simpleaffy yaqcaffy->geneplotter GEOquery->methods GEOquery->Biobase GEOquery->RCurl nnNorm->nnet nnNorm->marray GEOmetadb->RSQLite GEOmetadb->GEOquery stepNorm->methods stepNorm->MASS stepNorm->marray gaga->Biobase gaga->coda goProfiles->Biobase goProfiles->AnnotationDbi goProfiles->GO.db panp->Biobase panp->affy geneRecommender->Biobase topGO->methods mdqc->MASS mdqc->cluster GeneSpring->methods GeneSpring->Biobase spkTools->Biobase spkTools->affy spkTools->RColorBrewer spkTools->geneplotter spkTools->gtools spkTools->SpikeIn spkTools->hgu133atagcdf GeneticsPed->MASS GeneticsPed->gdata GeneticsPed->genetics KEGGSOAP->methods KEGGSOAP->XML KEGGSOAP->RCurl KEGGSOAP->SSOAP webbioc->Biobase webbioc->multtest webbioc->affy webbioc->vsn webbioc->gcrma webbioc->annaffy webbioc->qvalue GlobalAncova->methods GlobalAncova->globaltest GlobalAncova->corpcor ACME->methods PGSEA->methods PGSEA->Biobase PGSEA->Ruuid BSgenome->methods BSgenome->Biobase BSgenome->Biostrings RMAGEML->methods RMAGEML->Biobase RMAGEML->limma RMAGEML->marray cellHTS2->methods cellHTS2->Biobase cellHTS2->genefilter cellHTS2->RColorBrewer cellHTS2->vsn cellHTS2->prada cellHTS2->splots splots->grid limmaGUI->limma limmaGUI->tcltk maDB->methods maDB->Biobase maDB->affy maDB->limma maDB->pgUtils pgUtils->methods pgUtils->RdbiPgSQL pgUtils->Rdbi macat->Biobase macat->annotate pdInfoBuilder->methods pdInfoBuilder->Biobase affycomp->methods affycomp->Biobase splicegear->methods splicegear->Biobase splicegear->grid splicegear->utils splicegear->XML genArise->methods genArise->xtable genArise->tkrplot genArise->locfit codelink->methods codelink->Biobase codelink->genefilter codelink->annotate codelink->limma siggenes->methods siggenes->Biobase siggenes->multtest siggenes->splines flowDB->Biobase flowDB->flowCore flowDB->XML rHVDM->Biobase rHVDM->affy rHVDM->R2HTML rHVDM->minpack.lm RWebServices->methods RWebServices->tools RWebServices->TypeInfo RWebServices->SJava Mfuzz->Biobase Mfuzz->e1071 cellHTS->Biobase cellHTS->genefilter cellHTS->RColorBrewer cellHTS->prada externalVector->methods externalVector->stats XDE->methods XDE->Biobase XDE->graphics lumi->methods lumi->affy lumi->mgcv Resourcerer->Biobase Resourcerer->AnnBuilder SAGElyzer->Biobase SAGElyzer->genefilter SAGElyzer->annotate SAGElyzer->tkWidgets SAGElyzer->AnnBuilder SAGElyzer->tcltk HilbertCurveDisplay->lattice maigesPack->methods maigesPack->graph maigesPack->limma maigesPack->marray maigesPack->convert flowQ->lattice flowQ->flowViz flowQ->outliers RLMM->MASS fdrame->tcltk BiostringsCinterfaceDemo->Biostrings affypdnn->affy Rredland->methods Rredland->graph GenomeGraphs->methods GenomeGraphs->grid GenomeGraphs->biomaRt arrayQualityMetrics->Biobase arrayQualityMetrics->genefilter arrayQualityMetrics->lattice arrayQualityMetrics->RColorBrewer arrayQualityMetrics->grid arrayQualityMetrics->simpleaffy arrayQualityMetrics->geneplotter arrayQualityMetrics->vsn arrayQualityMetrics->affyPLM arrayQualityMetrics->beadarray arrayQualityMetrics->latticeExtra aroma.light->R.methodsS3 xps xps methods methods edd edd golubEsets golubEsets Biobase Biobase class class nnet nnet xtable xtable Biostrings Biostrings stats stats LMGene LMGene multtest multtest survival survival genefilter genefilter Icens Icens iterativeBMAsurv iterativeBMAsurv BMA BMA leaps leaps splines splines Rtreemix Rtreemix graph graph maCorrPlot maCorrPlot lattice lattice pickgene pickgene MASS MASS Harshlight Harshlight affy affy altcdfenvs altcdfenvs nem nem e1071 e1071 Rgraphviz Rgraphviz RBGL RBGL time time cluster cluster bootstrap bootstrap RColorBrewer RColorBrewer plotrix plotrix apComplex apComplex org.Sc.sgd.db org.Sc.sgd.db annotate annotate AnnotationDbi AnnotationDbi hexbin hexbin grid grid EBImage EBImage graphics graphics utils utils hypergraph hypergraph made4 made4 ade4 ade4 preprocessCore preprocessCore exonmap exonmap simpleaffy simpleaffy RMySQL RMySQL DBI DBI plier plier bgafun bgafun seqinr seqinr pdmclass pdmclass fibroEset fibroEset mda mda Ringo Ringo geneplotter geneplotter limma limma vsn vsn SparseM SparseM factDesign factDesign keggorth keggorth hgu95av2.db hgu95av2.db ALL ALL flowClust flowClust mnormt mnormt mclust mclust ellipse ellipse flowCore flowCore SIM SIM fields fields globaltest globaltest marray marray quantsmooth quantsmooth clac clac MVCClass MVCClass pamr pamr SemSim SemSim GO GO SLqPCR SLqPCR affyQCReport affyQCReport affyPLM affyPLM Ruuid Ruuid BiocCaseStudies BiocCaseStudies tools tools ncdfExts ncdfExts ncdf ncdf BufferedMatrixMethods BufferedMatrixMethods BufferedMatrix BufferedMatrix Rintact Rintact XML XML metaArray metaArray MergeMaid MergeMaid RefPlus RefPlus BGmix BGmix KernSmooth KernSmooth CoCiteStats CoCiteStats org.Hs.eg.db org.Hs.eg.db puma puma ROCR ROCR weaver weaver digest digest codetools codetools pkgDepTools pkgDepTools annotationTools annotationTools Rrsat Rrsat affycoretools affycoretools GOstats GOstats biomaRt biomaRt gcrma gcrma annaffy annaffy fbat fbat GeneticsBase GeneticsBase MiPP MiPP buildBioC buildBioC DynDoc DynDoc VanillaICE VanillaICE SNPchip SNPchip oligoClasses oligoClasses beadarraySNP beadarraySNP sizepower sizepower ontoTools ontoTools GO.db GO.db EBarrays EBarrays xcms xcms rfcprim rfcprim rflowcyt rflowcyt rfcdmin rfcdmin GSEABase GSEABase MANOR MANOR GLAD GLAD TypeInfo TypeInfo bridge bridge rama rama BioMVCClass BioMVCClass Rrefdb Rrefdb plw plw CMA CMA lapmix lapmix BeadExplorer BeadExplorer widgetTools widgetTools R2HTML R2HTML grDevices grDevices tkWidgets tkWidgets OutlierD OutlierD quantreg quantreg GeneRfold GeneRfold GeneR GeneR PCpheno PCpheno ScISI ScISI SLGI SLGI ppiStats ppiStats ppiData ppiData KEGG.db KEGG.db twilight twilight plateCore plateCore flowViz flowViz aCGH aCGH sma sma flygrid flygrid RpsiXML RpsiXML pcaMethods pcaMethods pls pls GGBase GGBase GSEAlm GSEAlm GeneMeta GeneMeta CORREP CORREP epistasis epistasis biocViews biocViews copa copa LPEadj LPEadj LPE LPE adSplit adSplit Category Category GeneSelector GeneSelector MassSpecWavelet MassSpecWavelet waveslim waveslim Rswub Rswub SJava SJava affyExonMuncher affyExonMuncher AnnBuilder AnnBuilder tcltk tcltk tkrplot tkrplot rtracklayer rtracklayer RCurl RCurl cosmoGUI cosmoGUI cosmo cosmo makecdfenv makecdfenv affyio affyio RBioinf RBioinf smoothMiner smoothMiner mgcv mgcv locfit locfit RbcBook1 RbcBook1 nudge nudge clusterStab clusterStab affyPara affyPara snow snow Ratlpow Ratlpow timecourse timecourse dualKS dualKS flowUtils flowUtils ITALICS ITALICS ITALICSData ITALICSData oligo oligo affxparser affxparser pd.mapping50k.xba240 pd.mapping50k.xba240 pd.mapping50k.hind240 pd.mapping50k.hind240 pd.mapping250k.sty pd.mapping250k.sty pd.mapping250k.nsp pd.mapping250k.nsp rsbml rsbml GeneticsDesign GeneticsDesign combinat combinat gdata gdata gmodels gmodels gtools gtools mvtnorm mvtnorm sscore sscore GGtools GGtools hgfocus.db hgfocus.db oneChannelGUI oneChannelGUI affylmGUI affylmGUI rrcov rrcov feature feature ROC ROC maSigPro maSigPro beadarray beadarray matchprobes matchprobes cghMCR cghMCR DNAcopy DNAcopy arrayQuality arrayQuality haplo.stats haplo.stats SBMLR SBMLR odesolve odesolve GeneTraffic GeneTraffic RSQLite RSQLite PROcess PROcess SMAP SMAP seqLogo seqLogo convert convert gridBase gridBase ShortRead ShortRead latticeExtra latticeExtra ABarray ABarray SAGx SAGx DEDS DEDS tilingArray tilingArray snpMatrix snpMatrix AffyCompatible AffyCompatible logicFS logicFS LogicReg LogicReg bgx bgx OCplus OCplus akima akima plgem plgem OrderedList OrderedList bioDist bioDist widgetInvoke widgetInvoke RGtk RGtk hopach hopach reb reb idiogram idiogram rbsurv rbsurv AffyExpress AffyExpress simulatorAPMS simulatorAPMS ecolitk ecolitk ecoliLeucine ecoliLeucine ecolicdf ecolicdf stam stam pamr(>= pamr(>= GraphAT GraphAT MCMCpack MCMCpack RDocBook RDocBook MLInterfaces MLInterfaces rpart rpart rda rda prism prism ArrayExpress ArrayExpress RdbiPgSQL RdbiPgSQL Rdbi Rdbi RSNPper RSNPper biocGraph biocGraph OLINgui OLINgui OLIN OLIN pcot2 pcot2 amap amap iterativeBMA iterativeBMA prada prada gaggle gaggle rJava rJava RUnit RUnit safe safe biocSurvey biocSurvey daMA daMA spikeLI spikeLI miRNApath miRNApath qvalue qvalue CALIB CALIB pathRender pathRender cMAP cMAP BCRANK BCRANK HEM HEM HELP HELP ssize ssize graphPart graphPart arules arules makePlatformDesign makePlatformDesign ctc ctc snapCGH snapCGH goTools goTools sagenhaft sagenhaft yaqcaffy yaqcaffy GEOquery GEOquery nnNorm nnNorm GEOmetadb GEOmetadb stepNorm stepNorm gaga gaga coda coda goProfiles goProfiles panp panp geneRecommender geneRecommender topGO topGO mdqc mdqc GeneSpring GeneSpring spkTools spkTools SpikeIn SpikeIn hgu133atagcdf hgu133atagcdf GeneticsPed GeneticsPed genetics genetics KEGGSOAP KEGGSOAP SSOAP SSOAP webbioc webbioc GlobalAncova GlobalAncova corpcor corpcor ACME ACME PGSEA PGSEA BSgenome BSgenome RMAGEML RMAGEML lodplot lodplot cellHTS2 cellHTS2 splots splots limmaGUI limmaGUI maDB maDB pgUtils pgUtils macat macat pdInfoBuilder pdInfoBuilder affycomp affycomp splicegear splicegear genArise genArise codelink codelink siggenes siggenes flowDB flowDB rHVDM rHVDM minpack.lm minpack.lm RWebServices RWebServices DynDoc(>= DynDoc(>= Mfuzz Mfuzz cellHTS cellHTS externalVector externalVector XDE XDE lumi lumi Resourcerer Resourcerer SAGElyzer SAGElyzer HilbertCurveDisplay HilbertCurveDisplay maigesPack maigesPack flowQ flowQ outliers outliers RLMM RLMM fdrame fdrame BiostringsCinterfaceDemo BiostringsCinterfaceDemo affypdnn affypdnn Rredland Rredland GenomeGraphs GenomeGraphs arrayQualityMetrics arrayQualityMetrics aroma.light aroma.light R.methodsS3 R.methodsS3