%global packname BSgenome %global BioC 2.4 Name: R-%{packname} Version: 1.12.0 Release: 1%{?dist} Summary: Infrastructure for Biostrings-based genome data packages Group: Applications/Engineering License: Artistic 2.0 URL: http://bioconductor.org/packages/%{BioC}/bioc/html/BSgenome.html Source0: http://bioconductor.org/packages/%{BioC}/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildArch: noarch Requires: R R-methods R-IRanges R-Biostrings Requires(post): R Requires(postun): R BuildRequires: R-devel tetex-latex R R-Biostrings-devel BuildRequires: R R-methods R-IRanges %description Infrastructure shared by all the Biostrings-based genome data packages %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} # architecture independant package mkdir -p %{buildroot}%{_datadir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_datadir}/R/library/R.css %check # The dependencies asked are: # 1- only 'suggests' # 2- really big # 3- contain only 'metadata' no code #%{_bindir}/R CMD check %{packname} %clean rm -rf %{buildroot} %post %{_R_make_search_index} %postun %{_R_make_search_index} %files %defattr(-, root, root, -) %dir %{_datadir}/R/library/%{packname}/ %doc %{_datadir}/R/library/%{packname}/doc %doc %{_datadir}/R/library/%{packname}/DESCRIPTION %doc %{_datadir}/R/library/%{packname}/html %doc %{_datadir}/R/library/%{packname}/latex/ %doc %{_datadir}/R/library/%{packname}/man/ %doc %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/extdata %{_datadir}/R/library/%{packname}/help %{_datadir}/R/library/%{packname}/R %{_datadir}/R/library/%{packname}/R-ex %{_datadir}/R/library/%{packname}/CONTENTS %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/Meta %{_datadir}/R/library/%{packname}/BSgenomeDataPkg-template %changelog * Mon May 17 2009 pingou 1.12.0-1 - Update to 1.12.0 for Bioconductor 2.4 and R 2.9.0 - Remove the dependency on R-Biobase which is not needed * Wed Apr 01 2009 pingou 1.10.5-2 - Add R-Biostrings-devel as BR - Define and use the macro BioC for the bioconductor release * Fri Mar 13 2009 pingou 1.10.5-1 - initial package for Fedora