%global packname GenomicRanges %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 1.0.7 Release: 1%{?dist} Summary: Representation and manipulation of genomic intervals Group: Applications/Engineering License: Artistic 2.0 URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) Requires: R >= 2.8.0 R-methods R-IRanges >= 1.5.74 BuildRequires: R-devel tex(latex) R >= 2.8.0 R-methods R-IRanges-devel >= 1.5.74 %description The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome. %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %check # Circular dependencies: # R-BSgenome depends on R-GenomicRanges which # suggests to have R-BSgenome #%%{_bindir}/R CMD check %%{packname} %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %dir %{rlibdir}/%{packname}/ %doc %{rlibdir}/%{packname}/doc/ %doc %{rlibdir}/%{packname}/html/ %doc %{rlibdir}/%{packname}/DESCRIPTION %{rlibdir}/%{packname}/INDEX %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/Meta/ %{rlibdir}/%{packname}/R/ %{rlibdir}/%{packname}/help/ %{rlibdir}/%{packname}/scripts/ %{rlibdir}/%{packname}/unitTests/ %{rlibdir}/%{packname}/libs/ %changelog * Thu Jul 29 2010 pingou 1.0.7-1 - Update to 1.0.7 - End directory by / in %%files * Mon Jul 19 2010 pingou 1.0.6-1 - Update to 1.0.6 - End directory by / in %%files - Change URL - Fix typo in the comment of check (dependencies) - Add dependencie to R-IRanges-devel * Tue Jun 29 2010 pingou 1.0.5-1 - initial package for Fedora