%global BioC      2.4
%global packname  IRanges

Name:             R-%{packname}
Version:          1.1.55
Release:          1%{?dist}
Summary:          Low-level containers for storing sets of integer ranges

Group:            Applications/Engineering 
License:          Artistic 2.0 and Copyright only
# See https://www.redhat.com/archives/fedora-r-devel-list/2009-April/msg00001.html
URL:              http://bioconductor.org/packages/%{BioC}/bioc/html/IRanges.html
Source0:          http://bioconductor.org/packages/%{BioC}/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

Requires:         R >= 2.8.0 R-methods R-stats R-RUnit R-Matrix
Requires(post):   R
Requires(postun): R
BuildRequires:    R-devel tetex-latex R >= 2.8.0 R-methods R-stats R-RUnit R-Matrix 

%description
The IRanges class and its extensions are low-level containers
for storing sets of integer ranges. A typical use of these containers
in biology is for representing a set of chromosome regions.
More specific extensions of the IRanges class will typically
allow the storage of additional information attached to each
chromosome region as well as a hierarchical relationship between
these regions.

%package        devel
Summary:        Development files for %{name}
Group:          Development/Libraries
Requires:       %{name} = %{version}-%{release}

%description    devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.


%prep
%setup -q -c -n %{packname}

%build

%install
rm -rf %{buildroot}


# x86/x86_64 -> Architecture dependent package
mkdir -p %{buildroot}%{_libdir}/R/library 
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css

%check
%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%post
%{_R_make_search_index}

%postun
%{_R_make_search_index}

%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}/
%doc %{_libdir}/R/library/%{packname}/latex
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/man
%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/extdata
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/R-ex
%{_libdir}/R/library/%{packname}/libs

%files devel
%defattr(-,root,root,-)
%{_libdir}/R/library/%{packname}/include

%changelog
* Wed Apr 01 2009 pingou <pingou@pingoured.fr> 1.1.55-1
- New release from bioconductor 2.4 which includes the change in
 the description file for the license used
- Update the license to its correct format

* Sun Mar 22 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-3
- The main package owns the directory
- Remove pkgconfig as R for the devel package
- Define becomes global

* Sat Mar 21 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-2
- Add R-Matrix as R and BR

* Fri Mar 13 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-1
- Update to 1.0.14

* Wed Feb 18 2009 pingou <pingou -AT- pingoured.fr> 1.0.11-1
- initial package for Fedora