The script starts for the libraries : ['affy', 'affydata', 'affyPLM', 'annaffy', 'annotate', 'Biobase', 'Biostrings', 'DynDoc', 'gcrma', 'genefilter', 'geneplotter', 'hgu95av2.db', 'limma', 'marray', 'matchprobes', 'multtest', 'ROC', 'vsn', 'xtable', 'affyQCReport'] Library Dependencies affy Biobase methods utils affyio preprocessCore affydata affyPLM affy Biobase methods gcrma stats preprocessCore annaffy methods Biobase GO.db KEGG.db annotate methods Biobase AnnotationDbi xtable Biobase tools methods utils Biostrings methods stats DynDoc methods utils gcrma Biobase affy matchprobes splines genefilter methods Biobase survival geneplotter Biobase methods lattice annotate hgu95av2.db limma methods marray limma methods matchprobes Biobase affy multtest methods Biobase survival ROC utils methods vsn methods lattice Biobase affy limma xtable affyQCReport Biobase affy simpleaffy xtable affyPLM RColorBrewer geneplotter genefilter lattice methods utils affyio methods preprocessCore methods stats GO.db KEGG.db AnnotationDbi methods utils Biobase DBI RSQLite tools splines survival lattice simpleaffy affy genefilter Biobase methods utils gcrma RColorBrewer DBI RSQLite # Number of libraries to package 36