/* Found 302 packages */ Depends: "xps" -> "methods"; Depends: "edd" -> "methods"; "edd" -> "golubEsets"; "edd" -> "Biobase"; "edd" -> "class"; "edd" -> "nnet"; "edd" -> "xtable"; Depends: "Biostrings" -> "methods"; "Biostrings" -> "stats"; "Biostrings" -> "utils"; "Biostrings" -> "Biobase"; Suggests: "Biostrings" -> "BSgenome"; "Biostrings" -> "BSgenome.Celegans.UCSC.ce2"; "Biostrings" -> "BSgenome.Dmelanogaster.UCSC.dm3"; "Biostrings" -> "drosophila2probe"; "Biostrings" -> "hgu95av2probe"; "Biostrings" -> "RUnit"; Depends: "LMGene" -> "Biobase"; "LMGene" -> "multtest"; "LMGene" -> "survival"; Depends: "genefilter" -> "methods"; "genefilter" -> "Biobase"; "genefilter" -> "survival"; Suggests: "genefilter" -> "class"; "genefilter" -> "hgu95av2.db"; "genefilter" -> "tkWidgets"; Depends: Depends: "Icens" -> "survival"; Depends: "iterativeBMAsurv" -> "BMA"; "iterativeBMAsurv" -> "leaps"; "iterativeBMAsurv" -> "survival"; "iterativeBMAsurv" -> "splines"; Depends: "Rtreemix" -> "methods"; "Rtreemix" -> "graph"; "Rtreemix" -> "Biobase"; Suggests: "Rtreemix" -> "Rgraphviz"; Depends: "maCorrPlot" -> "lattice"; Depends: "pickgene" -> "MASS"; Depends: "Harshlight" -> "affy"; "Harshlight" -> "altcdfenvs"; Depends: "nem" -> "e1071"; "nem" -> "graph"; "nem" -> "Rgraphviz"; "nem" -> "RBGL"; "nem" -> "time"; "nem" -> "cluster"; "nem" -> "bootstrap"; "nem" -> "RColorBrewer"; "nem" -> "plotrix"; Suggests: "nem" -> "Biobase"; Depends: "apComplex" -> "graph"; "apComplex" -> "RBGL"; "apComplex" -> "Rgraphviz"; "apComplex" -> "org.Sc.sgd.db"; Suggests: "apComplex" -> ""; Depends: "annotate" -> "methods"; "annotate" -> "Biobase"; "annotate" -> "AnnotationDbi"; "annotate" -> "xtable"; Suggests: "annotate" -> "hgu95av2.db"; "annotate" -> "genefilter"; "annotate" -> "Biostrings"; "annotate" -> "rae230a.db"; "annotate" -> "rae230aprobe"; "annotate" -> "tkWidgets"; "annotate" -> "XML"; "annotate" -> "GO.db"; "annotate" -> "org.Hs.eg.db"; "annotate" -> "org.Mm.eg.db"; "annotate" -> "hom.Hs.inp.db"; Depends: "hexbin" -> "methods"; "hexbin" -> "stats"; "hexbin" -> "grid"; "hexbin" -> "lattice"; Suggests: "hexbin" -> "marray"; "hexbin" -> "cluster"; "hexbin" -> "affy"; "hexbin" -> "Biobase"; Depends: Suggests: "GLAD" -> "aws"; "GLAD" -> "tcltk"; Depends: "EBImage" -> "methods"; "EBImage" -> "graphics"; "EBImage" -> "stats"; "EBImage" -> "utils"; Depends: "hypergraph" -> "methods"; "hypergraph" -> "graph"; Depends: "made4" -> "ade4"; Suggests: "made4" -> "affy"; "made4" -> "RColorBrewer"; "made4" -> "gplots"; "made4" -> "scatterplot3d"; Depends: "preprocessCore" -> "methods"; Depends: Suggests: "affxparser" -> "R.utils"; "affxparser" -> "AffymetrixDataTestFiles"; Depends: "exonmap" -> "affy"; "exonmap" -> "genefilter"; "exonmap" -> "RColorBrewer"; "exonmap" -> "RMySQL"; "exonmap" -> "DBI"; "exonmap" -> "methods"; Depends: "bgafun" -> "made4"; "bgafun" -> "seqinr"; "bgafun" -> "ade4"; Depends: "pdmclass" -> "Biobase"; "pdmclass" -> "fibroEset"; "pdmclass" -> "mda"; Depends: "Ringo" -> "graphics"; "Ringo" -> "methods"; "Ringo" -> "Biobase"; "Ringo" -> "genefilter"; "Ringo" -> "geneplotter"; "Ringo" -> "limma"; "Ringo" -> "vsn"; "Ringo" -> "RColorBrewer"; "Ringo" -> "SparseM"; Depends: "factDesign" -> "Biobase"; "factDesign" -> "affy"; "factDesign" -> "stats"; Depends: "keggorth" -> "graph"; "keggorth" -> "hgu95av2.db"; "keggorth" -> "RBGL"; "keggorth" -> "ALL"; Depends: "flowClust" -> "methods"; "flowClust" -> "mnormt"; "flowClust" -> "mclust"; "flowClust" -> "ellipse"; "flowClust" -> "flowCore"; Depends: "SIM" -> "fields"; "SIM" -> "globaltest"; "SIM" -> "marray"; "SIM" -> "quantsmooth"; "SIM" -> "clac"; Depends: "MVCClass" -> "methods"; Depends: "pamr" -> "cluster"; "pamr" -> "survival"; Depends: "SemSim" -> "GO"; "SemSim" -> "annotate"; Suggests: "SemSim" -> "cluster"; "SemSim" -> "hgu133plus2"; Depends: Depends: Suggests: "sigPathway" -> "hgu133a"; "sigPathway" -> "XML"; Depends: "SLqPCR" -> "stats"; "SLqPCR" -> "RColorBrewer"; Depends: "affyQCReport" -> "Biobase"; "affyQCReport" -> "affy"; "affyQCReport" -> "simpleaffy"; "affyQCReport" -> "xtable"; "affyQCReport" -> "affyPLM"; "affyQCReport" -> "RColorBrewer"; "affyQCReport" -> "geneplotter"; "affyQCReport" -> "genefilter"; "affyQCReport" -> "lattice"; Suggests: "affyQCReport" -> "tkWidgets"; "affyQCReport" -> "affydata"; Depends: "Ruuid" -> "methods"; Depends: "BiocCaseStudies" -> "tools"; "BiocCaseStudies" -> "methods"; "BiocCaseStudies" -> "utils"; "BiocCaseStudies" -> "Biobase"; Depends: "ncdfExts" -> "ncdf"; "ncdfExts" -> "methods"; Depends: "BufferedMatrixMethods" -> "BufferedMatrix"; "BufferedMatrixMethods" -> "methods"; Suggests: "BufferedMatrixMethods" -> "affyio"; "BufferedMatrixMethods" -> "affy"; Depends: "Rintact" -> "Biobase"; "Rintact" -> "XML"; "Rintact" -> "graph"; "Rintact" -> "hypergraph"; "Rintact" -> "RBGL"; "Rintact" -> "methods"; Depends: "metaArray" -> "MergeMaid"; Depends: "RefPlus" -> "Biobase"; "RefPlus" -> "affy"; "RefPlus" -> "affyPLM"; Suggests: "RefPlus" -> "affydata"; Depends: Suggests: "maanova" -> "qvalue"; "maanova" -> "snow"; Depends: "BGmix" -> "KernSmooth"; Depends: "CoCiteStats" -> "org.Hs.eg.db"; Depends: "puma" -> "Biobase"; "puma" -> "affy"; "puma" -> "limma"; "puma" -> "annotate"; "puma" -> "ROCR"; Suggests: "puma" -> "pumadata"; "puma" -> "snow"; Depends: "weaver" -> "digest"; "weaver" -> "tools"; "weaver" -> "utils"; "weaver" -> "codetools"; Suggests: "weaver" -> "codetools"; Depends: Depends: "pkgDepTools" -> "methods"; "pkgDepTools" -> "graph"; "pkgDepTools" -> "RBGL"; Suggests: "pkgDepTools" -> "Biobase"; "pkgDepTools" -> "Rgraphviz"; "pkgDepTools" -> "RCurl"; Depends: "annotationTools" -> "Biobase"; Depends: "Rrsat" -> "methods"; Depends: Depends: "affycoretools" -> "affy"; "affycoretools" -> "limma"; "affycoretools" -> "GOstats"; "affycoretools" -> "biomaRt"; "affycoretools" -> "gcrma"; "affycoretools" -> "Biobase"; "affycoretools" -> "annotate"; "affycoretools" -> "xtable"; "affycoretools" -> "annaffy"; "affycoretools" -> "AnnotationDbi"; Suggests: "affycoretools" -> "hgfocus"; "affycoretools" -> "hgfocuscdf"; Depends: "fbat" -> "MASS"; "fbat" -> "GeneticsBase"; Depends: Depends: "MiPP" -> "Biobase"; "MiPP" -> "e1071"; "MiPP" -> "MASS"; Depends: "buildBioC" -> "DynDoc"; "buildBioC" -> "tools"; Depends: "VanillaICE" -> "SNPchip"; "VanillaICE" -> "oligoClasses"; "VanillaICE" -> "Biobase"; "VanillaICE" -> "methods"; Suggests: "VanillaICE" -> "RColorBrewer"; "VanillaICE" -> "genefilter"; "VanillaICE" -> "RSQLite"; Depends: "beadarraySNP" -> "methods"; "beadarraySNP" -> "tools"; "beadarraySNP" -> "Biobase"; "beadarraySNP" -> "quantsmooth"; Suggests: "beadarraySNP" -> "aCGH"; "beadarraySNP" -> "affy"; "beadarraySNP" -> "limma"; "beadarraySNP" -> "snapCGH"; "beadarraySNP" -> "beadarray"; Depends: "sizepower" -> "stats"; Depends: "ontoTools" -> "methods"; "ontoTools" -> "graph"; "ontoTools" -> "SparseM"; "ontoTools" -> "GO.db"; "ontoTools" -> "Biobase"; "ontoTools" -> "annotate"; Suggests: "ontoTools" -> "combinat"; "ontoTools" -> "Iyer517"; "ontoTools" -> "org.Hs.eg.db"; Depends: "EBarrays" -> "Biobase"; "EBarrays" -> "utils"; "EBarrays" -> "lattice"; "EBarrays" -> "cluster"; Depends: Depends: "xcms" -> "methods"; Suggests: "xcms" -> "faahKO"; "xcms" -> "msdata"; "xcms" -> "multtest"; "xcms" -> "ncdf"; "xcms" -> "rgl"; "xcms" -> "MassSpecWavelet"; "xcms" -> "Rgraphviz"; Depends: "simpleaffy" -> "affy"; "simpleaffy" -> "genefilter"; "simpleaffy" -> "Biobase"; "simpleaffy" -> "methods"; "simpleaffy" -> "utils"; "simpleaffy" -> "gcrma"; Depends: Depends: "rfcprim" -> "rflowcyt"; "rfcprim" -> "rfcdmin"; Depends: Suggests: "explorase" -> "cairoDevice"; Depends: Depends: "GSEABase" -> "methods"; "GSEABase" -> "AnnotationDbi"; "GSEABase" -> "Biobase"; "GSEABase" -> "annotate"; "GSEABase" -> "graph"; Suggests: "GSEABase" -> "Ruuid"; "GSEABase" -> "hgu95av2.db"; "GSEABase" -> "GO.db"; "GSEABase" -> "org.Hs.eg.db"; Depends: "MANOR" -> "GLAD"; Depends: "TypeInfo" -> "methods"; Depends: "bridge" -> "rama"; Depends: "BioMVCClass" -> "methods"; "BioMVCClass" -> "MVCClass"; "BioMVCClass" -> "Biobase"; "BioMVCClass" -> "graph"; "BioMVCClass" -> "Rgraphviz"; Depends: "Rrefdb" -> "tools"; "Rrefdb" -> "methods"; "Rrefdb" -> "utils"; Depends: "plw" -> "MASS"; "plw" -> "affy"; "plw" -> "splines"; Suggests: "plw" -> "limma"; Depends: "CMA" -> "methods"; "CMA" -> "stats"; "CMA" -> "Biobase"; Suggests: "CMA" -> "MASS"; "CMA" -> "class"; "CMA" -> "nnet"; "CMA" -> "glmpath"; "CMA" -> "e1071"; "CMA" -> "randomForest"; "CMA" -> "plsgenomics"; "CMA" -> "gbm"; "CMA" -> "mgcv"; "CMA" -> "corpcor"; "CMA" -> "limma"; Depends: "lapmix" -> "Biobase"; Depends: "BeadExplorer" -> "widgetTools"; "BeadExplorer" -> "affy"; "BeadExplorer" -> "R2HTML"; "BeadExplorer" -> "grDevices"; "BeadExplorer" -> "tkWidgets"; "BeadExplorer" -> "methods"; Depends: "OutlierD" -> "Biobase"; "OutlierD" -> "quantreg"; Depends: "GeneRfold" -> "GeneR"; Depends: "PCpheno" -> "ScISI"; "PCpheno" -> "SLGI"; "PCpheno" -> "ppiStats"; "PCpheno" -> "ppiData"; "PCpheno" -> "org.Sc.sgd.db"; "PCpheno" -> "KEGG.db"; "PCpheno" -> "GO.db"; Depends: "twilight" -> "splines"; "twilight" -> "stats"; "twilight" -> "Biobase"; Suggests: "twilight" -> "golubEsets"; "twilight" -> "vsn"; Depends: "plateCore" -> "flowCore"; "plateCore" -> "flowViz"; Depends: Depends: "aCGH" -> "cluster"; "aCGH" -> "survival"; "aCGH" -> "multtest"; "aCGH" -> "sma"; Depends: "flygrid" -> "Rgraphviz"; "flygrid" -> "RColorBrewer"; Suggests: "flygrid" -> ""; Depends: "RpsiXML" -> "annotate"; "RpsiXML" -> "XML"; "RpsiXML" -> "Biobase"; "RpsiXML" -> "graph"; "RpsiXML" -> "hypergraph"; "RpsiXML" -> "RBGL"; "RpsiXML" -> "methods"; Depends: "affyPLM" -> "affy"; "affyPLM" -> "Biobase"; "affyPLM" -> "methods"; "affyPLM" -> "gcrma"; "affyPLM" -> "stats"; "affyPLM" -> "preprocessCore"; Suggests: "affyPLM" -> "affydata"; Depends: Depends: "pcaMethods" -> "MASS"; "pcaMethods" -> "pls"; "pcaMethods" -> "methods"; Suggests: "pcaMethods" -> "aroma.light"; Depends: "GGBase" -> "methods"; "GGBase" -> "Biobase"; "GGBase" -> "GSEABase"; Suggests: "GGBase" -> "GGtools"; Depends: "GSEAlm" -> "Biobase"; Suggests: "GSEAlm" -> "Category"; "GSEAlm" -> "multtest"; "GSEAlm" -> "ALL"; "GSEAlm" -> "annotate"; "GSEAlm" -> "hgu95av2.db"; "GSEAlm" -> "genefilter"; "GSEAlm" -> "GOstats"; "GSEAlm" -> "RColorBrewer"; Depends: "GeneMeta" -> "methods"; "GeneMeta" -> "Biobase"; "GeneMeta" -> "genefilter"; Depends: "CORREP" -> "e1071"; Suggests: "CORREP" -> "cluster"; Depends: "epistasis" -> "methods"; "epistasis" -> "graph"; Depends: "biocViews" -> "methods"; "biocViews" -> "tools"; "biocViews" -> "graph"; "biocViews" -> "RBGL"; "biocViews" -> "XML"; Depends: "copa" -> "Biobase"; "copa" -> "methods"; Suggests: "copa" -> "colonCA"; Depends: "LPEadj" -> "LPE"; Depends: "adSplit" -> "methods"; "adSplit" -> "graphics"; "adSplit" -> "stats"; "adSplit" -> "cluster"; "adSplit" -> "multtest"; Suggests: "adSplit" -> "golubEsets"; "adSplit" -> "vsn"; "adSplit" -> "hu6800.db"; Depends: Depends: "multtest" -> "methods"; "multtest" -> "Biobase"; "multtest" -> "survival"; Depends: "ppiStats" -> "GO.db"; "ppiStats" -> "GOstats"; "ppiStats" -> "org.Sc.sgd.db"; "ppiStats" -> "graph"; "ppiStats" -> "Category"; "ppiStats" -> "ppiData"; "ppiStats" -> "ScISI"; "ppiStats" -> "lattice"; "ppiStats" -> "grid"; "ppiStats" -> "RColorBrewer"; "ppiStats" -> "Biobase"; "ppiStats" -> "AnnotationDbi"; "ppiStats" -> "methods"; Suggests: "ppiStats" -> "yeastExpData"; "ppiStats" -> "geneplotter"; "ppiStats" -> "xtable"; Depends: "GeneSelector" -> "methods"; "GeneSelector" -> "stats"; "GeneSelector" -> "Biobase"; Suggests: "GeneSelector" -> "multtest"; "GeneSelector" -> "siggenes"; "GeneSelector" -> "samr"; "GeneSelector" -> "limma"; "GeneSelector" -> "sma"; Depends: "MassSpecWavelet" -> "waveslim"; Suggests: "MassSpecWavelet" -> "xcms"; "MassSpecWavelet" -> "caTools"; Depends: "Rswub" -> "SJava"; Depends: "affyExonMuncher" -> "AnnBuilder"; "affyExonMuncher" -> "tcltk"; "affyExonMuncher" -> "geneplotter"; "affyExonMuncher" -> "tkrplot"; Depends: "rtracklayer" -> "Biobase"; "rtracklayer" -> "methods"; "rtracklayer" -> "RCurl"; "rtracklayer" -> "Biostrings"; Depends: Depends: "cosmoGUI" -> "tkWidgets"; "cosmoGUI" -> "cosmo"; Depends: Depends: "makecdfenv" -> "methods"; "makecdfenv" -> "Biobase"; "makecdfenv" -> "affy"; "makecdfenv" -> "utils"; "makecdfenv" -> "affyio"; Depends: "RBioinf" -> "graph"; "RBioinf" -> "methods"; Depends: "smoothMiner" -> "tools"; "smoothMiner" -> "methods"; "smoothMiner" -> "utils"; "smoothMiner" -> "mgcv"; "smoothMiner" -> "Biobase"; "smoothMiner" -> "locfit"; "smoothMiner" -> "Biostrings"; Depends: "RbcBook1" -> "Biobase"; "RbcBook1" -> "graph"; Depends: "BufferedMatrix" -> "methods"; Depends: "nudge" -> "stats"; Depends: "clusterStab" -> "Biobase"; "clusterStab" -> "methods"; Suggests: "clusterStab" -> "fibroEset"; "clusterStab" -> "genefilter"; Depends: "DFP" -> "methods"; "DFP" -> "Biobase"; Depends: "globaltest" -> "methods"; "globaltest" -> "graphics"; "globaltest" -> "multtest"; "globaltest" -> "AnnotationDbi"; "globaltest" -> "annotate"; Suggests: "globaltest" -> "vsn"; "globaltest" -> "golubEsets"; "globaltest" -> "KEGG.db"; "globaltest" -> "hu6800.db"; "globaltest" -> "GOstats"; "globaltest" -> "Rgraphviz"; "globaltest" -> "GO.db"; Depends: "affyPara" -> "affy"; "affyPara" -> "snow"; Depends: "Ratlpow" -> "methods"; "Ratlpow" -> "limma"; Depends: Suggests: "vbmp" -> "Biobase"; "vbmp" -> "statmod"; Depends: "timecourse" -> "limma"; "timecourse" -> "MASS"; "timecourse" -> "Biobase"; "timecourse" -> "methods"; Depends: "dualKS" -> "Biobase"; "dualKS" -> "affy"; "dualKS" -> "methods"; Depends: "flowUtils" -> "flowCore"; "flowUtils" -> "Biobase"; "flowUtils" -> "XML"; Depends: "ITALICS" -> "GLAD"; "ITALICS" -> "ITALICSData"; "ITALICS" -> "oligo"; "ITALICS" -> "affxparser"; "ITALICS" -> "pd.mapping50k.xba240"; "ITALICS" -> "pd.mapping50k.hind240"; "ITALICS" -> "pd.mapping250k.sty"; "ITALICS" -> "pd.mapping250k.nsp"; Depends: "rsbml" -> "graph"; "rsbml" -> "methods"; "rsbml" -> "utils"; Depends: "widgetTools" -> "methods"; "widgetTools" -> "utils"; "widgetTools" -> "tcltk"; Suggests: "widgetTools" -> "Biobase"; Depends: "GeneticsDesign" -> "combinat"; "GeneticsDesign" -> "gdata"; "GeneticsDesign" -> "gmodels"; "GeneticsDesign" -> "gtools"; "GeneticsDesign" -> "mvtnorm"; Depends: "sscore" -> "affy"; Depends: "GGtools" -> "methods"; "GGtools" -> "Biobase"; "GGtools" -> "GGBase"; "GGtools" -> "hgfocus.db"; "GGtools" -> ""; Suggests: "GGtools" -> "illuminaHumanv1.db"; "GGtools" -> "GGdata"; "GGtools" -> "org.Hs.eg.db"; "GGtools" -> "rtracklayer"; Depends: Depends: "oneChannelGUI" -> "Biobase"; "oneChannelGUI" -> "affylmGUI"; "oneChannelGUI" -> "tkWidgets"; Suggests: "oneChannelGUI" -> "annotate"; "oneChannelGUI" -> "GOstats"; "oneChannelGUI" -> "genefilter"; "oneChannelGUI" -> "maSigPro"; "oneChannelGUI" -> "pamr"; "oneChannelGUI" -> "pdmclass"; "oneChannelGUI" -> "Rgraphviz"; "oneChannelGUI" -> "affy"; "oneChannelGUI" -> "annaffy"; "oneChannelGUI" -> "affyPLM"; "oneChannelGUI" -> "multtest"; "oneChannelGUI" -> "ssize"; "oneChannelGUI" -> "sizepower"; "oneChannelGUI" -> "siggenes"; "oneChannelGUI" -> "RankProd"; "oneChannelGUI" -> "org.Hs.eg.db"; "oneChannelGUI" -> "org.Mm.eg.db"; "oneChannelGUI" -> "org.Rn.eg.db"; "oneChannelGUI" -> "metaArray"; "oneChannelGUI" -> "biomaRt"; "oneChannelGUI" -> "GenomeGraphs"; Depends: Depends: "flowCore" -> "methods"; "flowCore" -> "rrcov"; "flowCore" -> "feature"; "flowCore" -> "Biobase"; Suggests: "flowCore" -> "flowViz"; Depends: "ROC" -> "utils"; "ROC" -> "methods"; Suggests: "ROC" -> "Biobase"; Depends: "affylmGUI" -> "limma"; "affylmGUI" -> "tcltk"; "affylmGUI" -> "affy"; "affylmGUI" -> "Biobase"; "affylmGUI" -> "affyio"; Suggests: "affylmGUI" -> "tkrplot"; "affylmGUI" -> "affyPLM"; "affylmGUI" -> "R2HTML"; "affylmGUI" -> "xtable"; Depends: "maSigPro" -> "Biobase"; Suggests: "maSigPro" -> "marray"; "maSigPro" -> "EMV"; "maSigPro" -> "limma"; "maSigPro" -> "Mfuzz"; Depends: "beadarray" -> "limma"; "beadarray" -> "Biobase"; "beadarray" -> "methods"; "beadarray" -> "geneplotter"; "beadarray" -> "affy"; Suggests: "beadarray" -> "beadarraySNP"; "beadarray" -> "lumi"; "beadarray" -> "vsn"; Depends: "altcdfenvs" -> "methods"; "altcdfenvs" -> "Biobase"; "altcdfenvs" -> "affy"; "altcdfenvs" -> "matchprobes"; "altcdfenvs" -> "makecdfenv"; "altcdfenvs" -> "Biostrings"; "altcdfenvs" -> "hypergraph"; Suggests: "altcdfenvs" -> "plasmodiumanophelescdf"; "altcdfenvs" -> "hgu95acdf"; "altcdfenvs" -> "hgu133aprobe"; "altcdfenvs" -> "hgu133a.db"; "altcdfenvs" -> "hgu133acdf"; "altcdfenvs" -> "Rgraphviz"; Depends: "cghMCR" -> "methods"; "cghMCR" -> "DNAcopy"; "cghMCR" -> "marray"; "cghMCR" -> "arrayQuality"; Depends: "GeneticsBase" -> "methods"; "GeneticsBase" -> "combinat"; "GeneticsBase" -> "xtable"; "GeneticsBase" -> "mvtnorm"; "GeneticsBase" -> "haplo.stats"; Depends: "SBMLR" -> "XML"; "SBMLR" -> "odesolve"; Depends: "GeneTraffic" -> "Biobase"; "GeneTraffic" -> "affy"; "GeneTraffic" -> "marray"; Depends: "AnnotationDbi" -> "methods"; "AnnotationDbi" -> "utils"; "AnnotationDbi" -> "Biobase"; "AnnotationDbi" -> "DBI"; "AnnotationDbi" -> "RSQLite"; Suggests: "AnnotationDbi" -> "hgu95av2.db"; "AnnotationDbi" -> "GO.db"; "AnnotationDbi" -> "human.db0"; "AnnotationDbi" -> "mouse.db0"; "AnnotationDbi" -> "rat.db0"; "AnnotationDbi" -> "fly.db0"; "AnnotationDbi" -> "yeast.db0"; "AnnotationDbi" -> "arabidopsis.db0"; "AnnotationDbi" -> "zebrafish.db0"; Depends: "PROcess" -> "Icens"; Depends: "SMAP" -> "methods"; Depends: "cosmo" -> "methods"; "cosmo" -> "utils"; "cosmo" -> "seqLogo"; Suggests: "cosmo" -> "cosmoGUI"; Depends: "arrayQuality" -> "marray"; "arrayQuality" -> "limma"; "arrayQuality" -> "convert"; "arrayQuality" -> "hexbin"; "arrayQuality" -> "gridBase"; "arrayQuality" -> "RColorBrewer"; Suggests: "arrayQuality" -> "mclust"; "arrayQuality" -> "MEEBOdata"; "arrayQuality" -> "HEEBOdata"; Depends: "ShortRead" -> "methods"; "ShortRead" -> "Biostrings"; "ShortRead" -> "Biobase"; "ShortRead" -> "lattice"; Depends: "flowViz" -> "flowCore"; "flowViz" -> "RColorBrewer"; "flowViz" -> "lattice"; "flowViz" -> "latticeExtra"; Depends: "ABarray" -> "Biobase"; "ABarray" -> "multtest"; "ABarray" -> "tcltk"; Suggests: "ABarray" -> "limma"; "ABarray" -> "LPE"; Depends: "DynDoc" -> "methods"; "DynDoc" -> "utils"; Depends: "SAGx" -> "stats"; "SAGx" -> "multtest"; "SAGx" -> "methods"; Suggests: "SAGx" -> "KEGG"; "SAGx" -> "hu6800"; Depends: "DEDS" -> "methods"; Depends: "tilingArray" -> "methods"; "tilingArray" -> "Biobase"; "tilingArray" -> "affy"; "tilingArray" -> "RColorBrewer"; Depends: "snpMatrix" -> "survival"; "snpMatrix" -> "methods"; Suggests: "snpMatrix" -> "hexbin"; Depends: Depends: "biomaRt" -> "methods"; "biomaRt" -> "RCurl"; Suggests: "biomaRt" -> "annotate"; Depends: "oligo" -> "methods"; "oligo" -> "Biobase"; Suggests: "oligo" -> "hapmap100kxba"; "oligo" -> "pd.mapping50k.xba240"; Depends: Depends: "AffyCompatible" -> "XML"; "AffyCompatible" -> "RCurl"; "AffyCompatible" -> "methods"; Depends: "logicFS" -> "LogicReg"; Suggests: "logicFS" -> "genefilter"; "logicFS" -> "siggenes"; Depends: "bgx" -> "Biobase"; "bgx" -> "affy"; "bgx" -> "gcrma"; Suggests: "bgx" -> "affydata"; "bgx" -> "hgu95av2cdf"; Depends: "OCplus" -> "akima"; "OCplus" -> "multtest"; Depends: "plgem" -> "Biobase"; "plgem" -> "MASS"; Depends: "OrderedList" -> "Biobase"; "OrderedList" -> "twilight"; Depends: "bioDist" -> "methods"; "bioDist" -> "Biobase"; Suggests: "bioDist" -> "locfit"; Depends: "widgetInvoke" -> "methods"; "widgetInvoke" -> "XML"; "widgetInvoke" -> "RGtk"; Depends: "hopach" -> "cluster"; "hopach" -> "Biobase"; "hopach" -> "methods"; Depends: "reb" -> "Biobase"; "reb" -> "idiogram"; Depends: "rbsurv" -> "Biobase"; "rbsurv" -> "survival"; Depends: "AffyExpress" -> "affy"; "AffyExpress" -> "limma"; Suggests: "AffyExpress" -> "simpleaffy"; "AffyExpress" -> "R2HTML"; "AffyExpress" -> "affyPLM"; "AffyExpress" -> "hgu95av2cdf"; "AffyExpress" -> "hgu95av2"; "AffyExpress" -> "test3cdf"; "AffyExpress" -> "genefilter"; "AffyExpress" -> "estrogen"; "AffyExpress" -> "annaffy"; "AffyExpress" -> "gcrma"; Depends: "oligoClasses" -> "Biobase"; Suggests: "oligoClasses" -> "RSQLite"; "oligoClasses" -> "oligo"; Depends: "RBGL" -> "graph"; "RBGL" -> "methods"; Depends: Depends: "simulatorAPMS" -> "graph"; "simulatorAPMS" -> "apComplex"; "simulatorAPMS" -> "Rgraphviz"; "simulatorAPMS" -> "ScISI"; "simulatorAPMS" -> "ppiStats"; Suggests: "simulatorAPMS" -> ""; Depends: "ecolitk" -> "affy"; "ecolitk" -> "ecoliLeucine"; "ecolitk" -> "ecolicdf"; "ecolitk" -> "Biobase"; Suggests: "ecolitk" -> "graph"; "ecolitk" -> "matchprobes"; "ecolitk" -> "multtest"; "ecolitk" -> "vsn"; Depends: "stam" -> "GO.db"; "stam" -> "Biobase"; "stam" -> "pamr"; Suggests: "stam" -> "golubEsets"; "stam" -> "hu6800.db"; Depends: "GraphAT" -> "MCMCpack"; "GraphAT" -> "graph"; Depends: "AnnBuilder" -> "methods"; "AnnBuilder" -> "Biobase"; "AnnBuilder" -> "XML"; "AnnBuilder" -> "annotate"; "AnnBuilder" -> "utils"; Suggests: "AnnBuilder" -> "RSQLite"; "AnnBuilder" -> "RCurl"; "AnnBuilder" -> "GO.db"; Depends: "RDocBook" -> "tools"; "RDocBook" -> "methods"; "RDocBook" -> "utils"; Depends: "MLInterfaces" -> "Biobase"; "MLInterfaces" -> "MASS"; "MLInterfaces" -> "methods"; "MLInterfaces" -> "genefilter"; "MLInterfaces" -> "rpart"; "MLInterfaces" -> "rda"; "MLInterfaces" -> "annotate"; Suggests: "MLInterfaces" -> "class"; "MLInterfaces" -> "cluster"; "MLInterfaces" -> "e1071"; "MLInterfaces" -> "ipred"; "MLInterfaces" -> "randomForest"; "MLInterfaces" -> "gpls"; "MLInterfaces" -> "pamr"; "MLInterfaces" -> "rpart"; "MLInterfaces" -> "MASS"; "MLInterfaces" -> "nnet"; "MLInterfaces" -> "ALL"; "MLInterfaces" -> "gbm"; "MLInterfaces" -> "mlbench"; "MLInterfaces" -> "hgu95av2.db"; "MLInterfaces" -> "som"; "MLInterfaces" -> "RColorBrewer"; "MLInterfaces" -> "hu6800.db"; "MLInterfaces" -> "golubEsets"; "MLInterfaces" -> "sma"; "MLInterfaces" -> "ada"; "MLInterfaces" -> "keggorth"; "MLInterfaces" -> "kernlab"; Depends: "prism" -> "EBImage"; Depends: "rflowcyt" -> "survival"; "rflowcyt" -> "xtable"; "rflowcyt" -> "stats"; "rflowcyt" -> "KernSmooth"; "rflowcyt" -> "MASS"; "rflowcyt" -> "grid"; "rflowcyt" -> "methods"; Depends: "ArrayExpress" -> "Biobase"; "ArrayExpress" -> "affy"; "ArrayExpress" -> "limma"; "ArrayExpress" -> "Biostrings"; Depends: "RdbiPgSQL" -> "Rdbi"; Depends: "RSNPper" -> "methods"; "RSNPper" -> "utils"; "RSNPper" -> "tools"; "RSNPper" -> "XML"; Depends: "biocGraph" -> "graph"; "biocGraph" -> "geneplotter"; "biocGraph" -> "Rgraphviz"; "biocGraph" -> "Biobase"; "biocGraph" -> "fibroEset"; "biocGraph" -> "hgu95av2.db"; "biocGraph" -> "methods"; Depends: "OLINgui" -> "OLIN"; Suggests: "OLINgui" -> "tcltk"; "OLINgui" -> "tkWidgets"; Depends: "pcot2" -> "grDevices"; "pcot2" -> "Biobase"; "pcot2" -> "amap"; Suggests: "pcot2" -> "multtest"; "pcot2" -> "hu6800"; "pcot2" -> "KEGG"; "pcot2" -> "mvtnorm"; Depends: "iterativeBMA" -> "BMA"; "iterativeBMA" -> "leaps"; "iterativeBMA" -> "Biobase"; Depends: "prada" -> "Biobase"; "prada" -> "RColorBrewer"; "prada" -> "grid"; "prada" -> "methods"; "prada" -> "rrcov"; Suggests: "prada" -> "cellHTS"; "prada" -> "rflowcyt"; "prada" -> "tcltk"; Depends: "gaggle" -> "rJava"; "gaggle" -> "graph"; "gaggle" -> "RUnit"; Depends: "annaffy" -> "methods"; "annaffy" -> "Biobase"; "annaffy" -> "GO.db"; "annaffy" -> "KEGG.db"; Suggests: "annaffy" -> "hgu95av2.db"; "annaffy" -> "multtest"; "annaffy" -> "tcltk"; Depends: "safe" -> "SparseM"; "safe" -> "GO"; "safe" -> "annotate"; "safe" -> "Biobase"; Suggests: "safe" -> "GOstats"; "safe" -> "Rgraphviz"; "safe" -> "multtest"; "safe" -> "hu6800i.db"; "safe" -> "survival"; Depends: Depends: "biocSurvey" -> "tools"; "biocSurvey" -> "methods"; "biocSurvey" -> "utils"; "biocSurvey" -> "graph"; "biocSurvey" -> "RBGL"; Depends: Depends: "Biobase" -> "tools"; "Biobase" -> "methods"; "Biobase" -> "utils"; Suggests: "Biobase" -> "tkWidgets"; "Biobase" -> "ALL"; Depends: "vsn" -> "methods"; "vsn" -> "lattice"; "vsn" -> "Biobase"; "vsn" -> "affy"; "vsn" -> "limma"; Suggests: "vsn" -> "affydata"; "vsn" -> "hgu95av2cdf"; "vsn" -> "geneplotter"; Depends: "daMA" -> "MASS"; Depends: "spikeLI" -> "utils"; Depends: "miRNApath" -> "methods"; Depends: "qvalue" -> "tcltk"; Depends: "CALIB" -> "limma"; "CALIB" -> "methods"; Depends: "pathRender" -> "graph"; "pathRender" -> "Rgraphviz"; "pathRender" -> "RColorBrewer"; "pathRender" -> "cMAP"; "pathRender" -> "AnnotationDbi"; Suggests: "pathRender" -> "ALL"; "pathRender" -> "hgu95av2.db"; Depends: "BCRANK" -> "methods"; Depends: "HEM" -> "Biobase"; Depends: "HELP" -> "stats"; "HELP" -> "graphics"; "HELP" -> "grDevices"; "HELP" -> "Biobase"; Depends: "GOstats" -> "graph"; "GOstats" -> "GO.db"; "GOstats" -> "annotate"; "GOstats" -> "RBGL"; Suggests: "GOstats" -> "hgu95av2.db"; "GOstats" -> "ALL"; "GOstats" -> "multtest"; "GOstats" -> "genefilter"; "GOstats" -> "RColorBrewer"; "GOstats" -> "Rgraphviz"; "GOstats" -> "xtable"; "GOstats" -> "SparseM"; Depends: "ssize" -> "gdata"; "ssize" -> "xtable"; Depends: "graphPart" -> "arules"; "graphPart" -> "graph"; "graphPart" -> "hypergraph"; "graphPart" -> "methods"; Depends: "makePlatformDesign" -> "affyio"; "makePlatformDesign" -> "oligo"; Depends: "ctc" -> "amap"; Depends: Depends: "convert" -> "Biobase"; "convert" -> "limma"; "convert" -> "marray"; "convert" -> "utils"; "convert" -> "methods"; Depends: "snapCGH" -> "limma"; "snapCGH" -> "tilingArray"; "snapCGH" -> "DNAcopy"; "snapCGH" -> "GLAD"; "snapCGH" -> "cluster"; "snapCGH" -> "methods"; "snapCGH" -> "aCGH"; Depends: "OLIN" -> "methods"; "OLIN" -> "stats"; "OLIN" -> "locfit"; "OLIN" -> "Biobase"; "OLIN" -> "marray"; Suggests: "OLIN" -> "convert"; "OLIN" -> "limma"; Depends: "goTools" -> "Biobase"; "goTools" -> "annotate"; "goTools" -> "GO"; Suggests: "goTools" -> "hgu133a"; Depends: "sagenhaft" -> "SparseM"; Depends: "yaqcaffy" -> "simpleaffy"; "yaqcaffy" -> "methods"; "yaqcaffy" -> "geneplotter"; Suggests: "yaqcaffy" -> "MAQCsubsetAFX"; Depends: "GEOquery" -> "methods"; "GEOquery" -> "Biobase"; "GEOquery" -> "RCurl"; Suggests: "GEOquery" -> "limma"; Depends: "plier" -> "affy"; "plier" -> "methods"; Depends: "nnNorm" -> "nnet"; "nnNorm" -> "marray"; Depends: "affyio" -> "methods"; Depends: "GEOmetadb" -> "GEOquery"; "GEOmetadb" -> "RSQLite"; Depends: "stepNorm" -> "marray"; "stepNorm" -> "MASS"; "stepNorm" -> "methods"; Depends: "gaga" -> "Biobase"; "gaga" -> "coda"; Depends: "goProfiles" -> "Biobase"; "goProfiles" -> "AnnotationDbi"; "goProfiles" -> "GO.db"; Suggests: "goProfiles" -> "org.Hs.eg.db"; Depends: "panp" -> "affy"; "panp" -> "Biobase"; Depends: "geneRecommender" -> "Biobase"; Depends: "topGO" -> "methods"; Suggests: "topGO" -> "ALL"; "topGO" -> "hgu95av2.db"; "topGO" -> "genefilter"; "topGO" -> "xtable"; "topGO" -> "multtest"; "topGO" -> "Rgraphviz"; "topGO" -> "hgu133a.db"; Depends: "geneplotter" -> "Biobase"; "geneplotter" -> "methods"; "geneplotter" -> "lattice"; "geneplotter" -> "annotate"; Suggests: "geneplotter" -> "hgu95av2.db"; "geneplotter" -> "hu6800.db"; "geneplotter" -> "hgu133a.db"; "geneplotter" -> "fibroEset"; "geneplotter" -> "Rgraphviz"; "geneplotter" -> "annotate"; Depends: "mdqc" -> "cluster"; "mdqc" -> "MASS"; Depends: "GeneSpring" -> "Biobase"; "GeneSpring" -> "methods"; Depends: "spkTools" -> "Biobase"; "spkTools" -> "RColorBrewer"; "spkTools" -> "gtools"; "spkTools" -> "geneplotter"; "spkTools" -> "affy"; "spkTools" -> "SpikeIn"; "spkTools" -> "hgu133atagcdf"; Depends: "GeneticsPed" -> "gdata"; "GeneticsPed" -> "genetics"; "GeneticsPed" -> "MASS"; Depends: Depends: "KEGGSOAP" -> "methods"; "KEGGSOAP" -> "XML"; "KEGGSOAP" -> "SSOAP"; "KEGGSOAP" -> "RCurl"; Depends: "webbioc" -> "Biobase"; "webbioc" -> "affy"; "webbioc" -> "multtest"; "webbioc" -> "annaffy"; "webbioc" -> "vsn"; "webbioc" -> "gcrma"; "webbioc" -> "qvalue"; Depends: "GlobalAncova" -> "methods"; "GlobalAncova" -> "corpcor"; "GlobalAncova" -> "globaltest"; Suggests: "GlobalAncova" -> "Biobase"; "GlobalAncova" -> "GO"; "GlobalAncova" -> "multtest"; "GlobalAncova" -> "golubEsets"; "GlobalAncova" -> "hu6800.db"; "GlobalAncova" -> "vsn"; Depends: "ACME" -> "methods"; Depends: "PGSEA" -> "methods"; "PGSEA" -> "Biobase"; "PGSEA" -> "Ruuid"; Suggests: "PGSEA" -> "GO"; "PGSEA" -> "GSEABase"; "PGSEA" -> "KEGG"; "PGSEA" -> "GEOquery"; Depends: "BSgenome" -> "methods"; "BSgenome" -> "Biobase"; "BSgenome" -> "Biostrings"; Suggests: "BSgenome" -> "BSgenome.Celegans.UCSC.ce2"; "BSgenome" -> "BSgenome.Hsapiens.UCSC.hg18"; "BSgenome" -> "hgu95av2probe"; Depends: "RMAGEML" -> "methods"; "RMAGEML" -> "marray"; "RMAGEML" -> "limma"; "RMAGEML" -> "Biobase"; Depends: "quantsmooth" -> "quantreg"; "quantsmooth" -> "lodplot"; "quantsmooth" -> "grid"; Depends: "MergeMaid" -> "survival"; "MergeMaid" -> "Biobase"; "MergeMaid" -> "MASS"; "MergeMaid" -> "methods"; Depends: "cellHTS2" -> "prada"; "cellHTS2" -> "RColorBrewer"; "cellHTS2" -> "Biobase"; "cellHTS2" -> "methods"; "cellHTS2" -> "genefilter"; "cellHTS2" -> "splots"; "cellHTS2" -> "vsn"; Suggests: "cellHTS2" -> "locfit"; Depends: "limmaGUI" -> "limma"; "limmaGUI" -> "tcltk"; Suggests: "limmaGUI" -> "statmod"; "limmaGUI" -> "sma"; "limmaGUI" -> "R2HTML"; "limmaGUI" -> "xtable"; "limmaGUI" -> "tkrplot"; Depends: "maDB" -> "Biobase"; "maDB" -> "affy"; "maDB" -> "pgUtils"; "maDB" -> "limma"; "maDB" -> "methods"; Suggests: "maDB" -> "geneplotter"; "maDB" -> "annaffy"; "maDB" -> "biomaRt"; Depends: "macat" -> "Biobase"; "macat" -> "annotate"; Suggests: "macat" -> "hgu95av2"; "macat" -> "stjudem"; Depends: "pdInfoBuilder" -> "methods"; "pdInfoBuilder" -> "Biobase"; Depends: "affycomp" -> "methods"; "affycomp" -> "Biobase"; Suggests: "affycomp" -> "splines"; Depends: Depends: "SNPchip" -> "Biobase"; "SNPchip" -> "methods"; "SNPchip" -> "oligoClasses"; Suggests: "SNPchip" -> "RSQLite"; "SNPchip" -> "geneplotter"; "SNPchip" -> "stats"; "SNPchip" -> "graphics"; "SNPchip" -> "VanillaICE"; "SNPchip" -> "RColorBrewer"; Depends: "splots" -> "grid"; Depends: Depends: "seqLogo" -> "methods"; "seqLogo" -> "grid"; Depends: "splicegear" -> "methods"; "splicegear" -> "utils"; "splicegear" -> "grid"; "splicegear" -> "Biobase"; "splicegear" -> "XML"; Depends: "Category" -> "methods"; "Category" -> "Biobase"; "Category" -> "graph"; Suggests: "Category" -> "EBarrays"; "Category" -> "ALL"; "Category" -> "Rgraphviz"; "Category" -> "RColorBrewer"; "Category" -> "xtable"; "Category" -> "hgu95av2.db"; "Category" -> "Matrix"; "Category" -> "KEGG.db"; "Category" -> "GO.db"; Depends: "genArise" -> "locfit"; "genArise" -> "tkrplot"; "genArise" -> "xtable"; "genArise" -> "methods"; Depends: "idiogram" -> "methods"; "idiogram" -> "Biobase"; "idiogram" -> "annotate"; "idiogram" -> "plotrix"; Suggests: "idiogram" -> "hu6800.db"; "idiogram" -> "golubEsets"; Depends: "ScISI" -> "methods"; "ScISI" -> "apComplex"; "ScISI" -> "GO.db"; "ScISI" -> "GOstats"; "ScISI" -> "graph"; "ScISI" -> "RBGL"; "ScISI" -> "Rgraphviz"; Depends: "codelink" -> "methods"; "codelink" -> "Biobase"; "codelink" -> "limma"; "codelink" -> "annotate"; "codelink" -> "genefilter"; Depends: "siggenes" -> "methods"; "siggenes" -> "multtest"; "siggenes" -> "Biobase"; "siggenes" -> "splines"; Suggests: "siggenes" -> "affy"; "siggenes" -> "annotate"; "siggenes" -> "genefilter"; "siggenes" -> "KernSmooth"; Depends: "flowDB" -> "flowCore"; "flowDB" -> "Biobase"; "flowDB" -> "XML"; Depends: "rHVDM" -> "R2HTML"; "rHVDM" -> "affy"; "rHVDM" -> "minpack.lm"; "rHVDM" -> "Biobase"; Depends: "RWebServices" -> "SJava"; "RWebServices" -> "TypeInfo"; "RWebServices" -> "methods"; "RWebServices" -> "tools"; Depends: Depends: "tkWidgets" -> "methods"; "tkWidgets" -> "widgetTools"; "tkWidgets" -> "DynDoc"; Suggests: "tkWidgets" -> "Biobase"; Depends: "Mfuzz" -> "Biobase"; "Mfuzz" -> "e1071"; Suggests: "Mfuzz" -> "marray"; Depends: "cellHTS" -> "prada"; "cellHTS" -> "RColorBrewer"; "cellHTS" -> "Biobase"; "cellHTS" -> "genefilter"; Suggests: "cellHTS" -> "Category"; "cellHTS" -> "GO"; "cellHTS" -> "vsn"; Depends: "externalVector" -> "methods"; "externalVector" -> "stats"; Depends: "XDE" -> "Biobase"; "XDE" -> "methods"; "XDE" -> "graphics"; Suggests: "XDE" -> "MergeMaid"; "XDE" -> "siggenes"; "XDE" -> "gtools"; "XDE" -> "MASS"; "XDE" -> "multtest"; "XDE" -> "genefilter"; "XDE" -> "geneplotter"; "XDE" -> "RColorBrewer"; "XDE" -> "GeneMeta"; Depends: "SLGI" -> "ScISI"; "SLGI" -> "lattice"; "SLGI" -> "methods"; "SLGI" -> "org.Sc.sgd.db"; "SLGI" -> "GO.db"; Depends: "graph" -> "methods"; Suggests: "graph" -> "SparseM"; "graph" -> "XML"; "graph" -> "RBGL"; Depends: "lumi" -> "annotate"; "lumi" -> "affy"; "lumi" -> "mgcv"; "lumi" -> "methods"; Suggests: "lumi" -> "Biobase"; "lumi" -> "beadarray"; "lumi" -> "limma"; "lumi" -> "vsn"; "lumi" -> "lumiBarnes"; "lumi" -> "lumiHumanAll.db"; "lumi" -> "lumiHumanIDMapping.db"; "lumi" -> "genefilter"; "lumi" -> "geneplotter"; "lumi" -> "RColorBrewer"; Depends: "matchprobes" -> "Biobase"; "matchprobes" -> "affy"; Suggests: "matchprobes" -> "hgu95av2cdf"; "matchprobes" -> "hgu95av2probe"; "matchprobes" -> "hu6800cdf"; "matchprobes" -> "hu6800probe"; Depends: "Resourcerer" -> "Biobase"; "Resourcerer" -> "AnnBuilder"; Depends: "SAGElyzer" -> "AnnBuilder"; "SAGElyzer" -> "tkWidgets"; "SAGElyzer" -> "genefilter"; "SAGElyzer" -> "annotate"; "SAGElyzer" -> "Biobase"; "SAGElyzer" -> "tcltk"; Depends: "limma" -> "methods"; Suggests: "limma" -> "affy"; "limma" -> "marray"; "limma" -> "MASS"; "limma" -> "splines"; "limma" -> "sma"; "limma" -> "statmod"; "limma" -> "vsn"; Depends: Suggests: "HilbertCurveDisplay" -> ""; Depends: "maigesPack" -> "convert"; "maigesPack" -> "graph"; "maigesPack" -> "limma"; "maigesPack" -> "marray"; "maigesPack" -> "methods"; Suggests: "maigesPack" -> "amap"; "maigesPack" -> "annotate"; "maigesPack" -> "class"; "maigesPack" -> "e1071"; "maigesPack" -> "MASS"; "maigesPack" -> "multtest"; "maigesPack" -> "OLIN"; "maigesPack" -> "R2HTML"; "maigesPack" -> "rgl"; "maigesPack" -> "som"; Depends: "flowQ" -> "outliers"; "flowQ" -> "lattice"; "flowQ" -> "flowViz"; "flowQ" -> "methods"; Depends: "gcrma" -> "Biobase"; "gcrma" -> "affy"; "gcrma" -> "matchprobes"; "gcrma" -> "splines"; Suggests: "gcrma" -> "affydata"; Depends: "RLMM" -> "MASS"; Depends: "pgUtils" -> "Rdbi"; "pgUtils" -> "RdbiPgSQL"; "pgUtils" -> "methods"; Depends: "affy" -> "Biobase"; "affy" -> "methods"; "affy" -> "utils"; "affy" -> "affyio"; "affy" -> "preprocessCore"; Suggests: "affy" -> "tkWidgets"; "affy" -> "affydata"; "affy" -> "geneplotter"; Depends: "fdrame" -> "tcltk"; Depends: "BiostringsCinterfaceDemo" -> "Biostrings"; Depends: Depends: "Rgraphviz" -> "methods"; "Rgraphviz" -> "utils"; "Rgraphviz" -> "graph"; "Rgraphviz" -> "grid"; Depends: "affypdnn" -> "affy"; Suggests: "affypdnn" -> "affydata"; "affypdnn" -> "hgu95av2probe"; Depends: "Rredland" -> "methods"; "Rredland" -> "graph"; Depends: "GenomeGraphs" -> "methods"; "GenomeGraphs" -> "biomaRt"; "GenomeGraphs" -> "grid"; Depends: "marray" -> "limma"; "marray" -> "methods"; Suggests: "marray" -> "tkWidgets"; Depends: "arrayQualityMetrics" -> "Biobase"; "arrayQualityMetrics" -> "geneplotter"; "arrayQualityMetrics" -> "genefilter"; "arrayQualityMetrics" -> "vsn"; "arrayQualityMetrics" -> "RColorBrewer"; "arrayQualityMetrics" -> "affyPLM"; "arrayQualityMetrics" -> "simpleaffy"; "arrayQualityMetrics" -> "lattice"; "arrayQualityMetrics" -> "latticeExtra"; "arrayQualityMetrics" -> "grid"; "arrayQualityMetrics" -> "beadarray"; "arrayQualityMetrics" -> "methods"; Suggests: "arrayQualityMetrics" -> "CCl4"; Depends: "aroma.light" -> "R.methodsS3"; Suggests: "aroma.light" -> "R.oo"; "aroma.light" -> "R.utils";