%global BioC      2.3
%global packname  rJava

Name:             R-%{packname}
Version:          0.6
Release:          1%{?dist}
Summary:          Low-level R to Java interface

Group:            Applications/Engineering 
License:          GPLv2 
URL:              http://bioconductor.org/packages/%{BioC}/bioc/html/rJava.html
Source0:          http://cran.r-project.org/src/contrib/rJava_0.6-2.tar.gz
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

Requires:         R-methods R-java
Requires(post):   R-java
Requires(postun): R-java
BuildRequires:    R-devel tetex-latex R >= 2.5.0 R-methods R-java-devel

%description
Low-level interface to Java VM very much like .C/.Call and friends. 
Allows creation of objects, calling methods and accessing fields.

%prep
%setup -q -c -n %{packname}

%build

%install
rm -rf %{buildroot}


# x86/x86_64 -> Architecture dependent package
mkdir -p %{buildroot}%{_libdir}/R/library 
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css

# noarch -> Architecture independent package
#mkdir -p %{buildroot}%{_datadir}/R/library 
#R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library
## Clean up in advance of check
#test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
#rm -rf %{buildroot}%{_datadir}/R/library/R.css

%check
%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%post
%{_R_make_search_index}

%postun
%{_R_make_search_index}

%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/latex
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/man
%doc %{_libdir}/R/library/%{packname}/NEWS
%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/R-ex
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/java
%{_libdir}/R/library/%{packname}/jri
%{_libdir}/R/library/%{packname}/libs

#noarch
#%dir %{_datadir}/R/library/%{packname}
#%doc %{_datadir}/R/library/%{packname}/latex
#%doc %{_datadir}/R/library/%{packname}/doc
#%doc %{_datadir}/R/library/%{packname}/html
#%doc %{_datadir}/R/library/%{packname}/DESCRIPTION
#%doc %{_datadir}/R/library/%{packname}/man
#%doc %{_datadir}/R/library/%{packname}/NEWS

%changelog
* Mon Mar 23 2009 pingou <pingou -AT- pingoured.fr> 0.6-1
- initial package for Fedora